Don't confuse the SCC utility channel number and the show channel number. A show channel number keeps climbing sequentially, regardless of universe limitations. On the hardware side, universe limitations do exist which is the reason that we have and use multiple universes. To test on universe 2, the beginning show channel number would be set to 4097, the hub jumpers set to universe 2, and the SSC would be set to a starting channel of 1.
I do however have a few questions for you. How are you setting the start channel of the SSC? If the hub is not working, by what method are you connecting to the SSC to set the start channel? What software are you using to run the test? Did you load the test firmware into the SSC to see if it is working at all?